Run_sspace-longread: an optimized edition of SSPACE-LongRead¶
Run_sspace-longread is an optimized edition of SSPACE-LongRead. We use the software mecat and minimap2 to align the raw Pacbio reads to the assembled contigs or scaffold insteading of blasr. Both of them have a higher efficiency than the software blasr, which is nearly 10 times faster.
Run_sspace-longread is free for academic and non-profit use (see License).
对于Run_sspace-longread, 采取mecat和Minimap2替换的版本, 可以下其中文文档 Chinese document