Run_sspace-longread: an optimized edition of SSPACE-LongRead

Run_sspace-longread is an optimized edition of SSPACE-LongRead. We use the software mecat and minimap2 to align the raw Pacbio reads to the assembled contigs or scaffold insteading of blasr. Both of them have a higher efficiency than the software blasr, which is nearly 10 times faster.

Run_sspace-longread is free for academic and non-profit use (see License).

对于Run_sspace-longread, 采取mecat和Minimap2替换的版本, 可以下其中文文档 Chinese document

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Run_sspace-longread pipeline. The workflow using long read sequence information to construct longer scaffolds